tag:blogger.com,1999:blog-8642098652061481174.post3655592931870537807..comments2012-02-14T00:28:22.005-08:00Comments on SNPedia: Promethease deCodes 23andMecariasohttp://www.blogger.com/profile/00896615627788687683noreply@blogger.comBlogger11125tag:blogger.com,1999:blog-8642098652061481174.post-82022658079288513242009-06-18T13:08:17.721-07:002009-06-18T13:08:17.721-07:00They rely on many of the the same published resear...They rely on many of the the same published research studies which you see in SNPedia. I am not able to speak about what additional considerations they might use.cariasohttps://www.blogger.com/profile/00896615627788687683noreply@blogger.comtag:blogger.com,1999:blog-8642098652061481174.post-23470292678800896372009-06-18T12:33:20.525-07:002009-06-18T12:33:20.525-07:00Cariaso, thanks again. I was wondering what Navige...Cariaso, thanks again. I was wondering what Navigenics and decodeme are using to make those conclusions. I asked them, but they never gave me a straight answer. I was hoping that u might know something about it. DO u?Johnhttps://www.blogger.com/profile/11333975507160077318noreply@blogger.comtag:blogger.com,1999:blog-8642098652061481174.post-78506996736161390422009-06-18T11:39:13.117-07:002009-06-18T11:39:13.117-07:00Good of you to ask. I assure you many more lurk qu...Good of you to ask. I assure you many more lurk quietly, but wonder the same things. <br /><br /><br />They are correct that it is not like dbSNP, but it is also much more than a blog. Much of the information in SNPedia comes from dbSNP. But though a mix of human editors and software tools SNPedia is able to incorporate and cross check many other sources. <br /><br /><br /><br />Your skepticism cariasohttps://www.blogger.com/profile/00896615627788687683noreply@blogger.comtag:blogger.com,1999:blog-8642098652061481174.post-63226479380684497052009-06-18T08:10:19.973-07:002009-06-18T08:10:19.973-07:00Cariaso, thanks for clearing my doubts. I was aski...Cariaso, thanks for clearing my doubts. I was asking those questions as many people told me that SNPedia is not a database like dbSNP from NCBI, but its a blog and we may not depend on it. I have no personal doubt of my own. I am just a learning student from Mississippi. Again, thanks for sharing the info.Johnhttps://www.blogger.com/profile/11333975507160077318noreply@blogger.comtag:blogger.com,1999:blog-8642098652061481174.post-49664942690291835232009-06-17T16:59:46.601-07:002009-06-17T16:59:46.601-07:00How often is promethease updated?
Currently there...How often is promethease updated?<br /><br />Currently there is no release schedule. When I feel like I've got something worth releasing I release. This could be 3 in a week, or nothing for 2 months. If your version is more than 30 days old its worth looking at <a href="http://www.snpedia.com/index.php?title=Promethease" rel="nofollow">the Promethease page</a> to see if there is a new versioncariasohttps://www.blogger.com/profile/00896615627788687683noreply@blogger.comtag:blogger.com,1999:blog-8642098652061481174.post-90163189446457305182009-06-17T12:59:59.217-07:002009-06-17T12:59:59.217-07:00Carisio,
How often is promethease updated? What da...Carisio,<br />How often is promethease updated? What databases does it use. Is there a webpage that explains this? How dependable is this database?Can it be used for peer reviewed publications? Pls comment.Johnhttps://www.blogger.com/profile/11333975507160077318noreply@blogger.comtag:blogger.com,1999:blog-8642098652061481174.post-1599398944221756432008-01-29T20:32:00.000-08:002008-01-29T20:32:00.000-08:00Mark,I suspect you were running 0.1.4. Promethease...Mark,<BR/><BR/>I suspect you were running 0.1.4. Promethease is now at 0.1.5. It's reports link to this <A HREF="http://www.snpedia.com/index.php?title=Promethease/results" REL="nofollow">results explanation</A><BR/><BR/>'keyerror on magnitude' is a clumsy note that it looked for, but did not find a particular piece of information. In time this and many other warnings will disappear, but for now cariasohttps://www.blogger.com/profile/00896615627788687683noreply@blogger.comtag:blogger.com,1999:blog-8642098652061481174.post-79150918339626329892008-01-24T16:15:00.000-08:002008-01-24T16:15:00.000-08:00Hi Michael, I like the word you coined "23etAl"! S...Hi Michael, <BR/><BR/>I like the word you coined "23etAl"! So I commented it in my blog below. <BR/><BR/>Simon<BR/>http://retail-genomics.blogspot.com/2008/01/another-player-joined-personal-genomics.htmlSimon Lin, MDhttps://www.blogger.com/profile/16283374049784946492noreply@blogger.comtag:blogger.com,1999:blog-8642098652061481174.post-88119725503291795352008-01-23T17:35:00.000-08:002008-01-23T17:35:00.000-08:00Thanks for the pointer to this. A couple questions...Thanks for the pointer to this. A couple questions... when I run it, I get a lot of 'keyerror on magnitude' lines. Bug?<BR/><BR/>Also, can you explain the output web page a little? What does the number (or None) to the left of the rsid represent? And, to the right of the rsid, only some of the SNPs have risk factors. Is this because the data is incomplete or inconclusive?Unknownhttps://www.blogger.com/profile/13454921698730814720noreply@blogger.comtag:blogger.com,1999:blog-8642098652061481174.post-24460849236464428902008-01-22T00:44:00.000-08:002008-01-22T00:44:00.000-08:00deCODEme and 23andMe have now both begun to releas...deCODEme and 23andMe have now both begun to release customer data. <BR/><BR/>Promethease is now at version 0.1.2 with the ability to autodetect and support these 4 formats (PGE, Promethease, deCODEme, and 23andMe).<BR/><BR/>SNPedia's page on <A HREF="http://www.snpedia.com/index.php?title=Promethease" REL="nofollow">Promethease</A> is now available.cariasohttps://www.blogger.com/profile/00896615627788687683noreply@blogger.comtag:blogger.com,1999:blog-8642098652061481174.post-85829355764827822872008-01-16T22:34:00.000-08:002008-01-16T22:34:00.000-08:00Looks interesting. Must get my own genome SNP-typ...Looks interesting. Must get my own genome SNP-typed sometime.Tim Readhttps://www.blogger.com/profile/11928033581270566398noreply@blogger.com